Wednesday, 2 September 2020

BIOLOGY IN HUMAN WELFARE XII

Revision Notes on Microbes in Human Welfare

Bacteria

(1) Study of bacteria is called bacteriology.

(2) Linnaeous placed them under genus vermes.

(3) Nageli classified bacteria under schizomycetes.

(4) Bacteria are unicellular, microscopic organisms.

(5) These are the smallest cell wall having prokaryotic cell.

(6) They differ from animals in having a rigid cell wall and being capable to synthesize vitamins.

Size:

(i) Bacteria are the smallest of all known cellular organisms which are visible only with the aid of microscope.

(ii) They are 3 to 5 microns (1 m = 1/1000 millimetre or about 1/25,000 inch) in length.

(iii) A few species of bacteria are approximately 15m in diameter.

Shape:

(i) The shape bacteria usually remain constant.

(ii) Some of them are able to change their shape and size with changes in environmental conditions. Such bacteria, which change their shape, are called pleomorphic.

(iii) The bacteria possess the following forms.

(a) Cocci: (GK. Kokkos = Berry) They are oval or spherical in shape. They are called micrococcus when occur singly as in Micrococcus, diplococcus when found in pairs as in Diplococcus pneumoniae, tetracoccus in fours, streptococcus when found in chains as in Streptococcus lactis, staphylococcus when occurring in grape like clusters as in Staphylococcus aureus and sarcine, when found in cubical packets of 8 or 64 as in Sarcina.

                                           

(b) Bacilli: They are rod–shaped bacteria with or without flagella. They may occur singly (bacillus), in pairs (diplobacillus) or in chain (streptobacillus).

(c) Vibrios: These are small and ‘comma like, kidney like. They have a flagellum at one end and are motile, vibrio bacteria has curve in its cell e.g., Vibrio cholerae.

(d) Spirillum (Spira = Coil): The spirillum bacteria (plural-spirilla). They are spiral or coiled like a cork-screw. The spirillar forms are usually rigid and bear two or more flagella at one or both the ends e.g. spirillum, spirochaete, etc.

(e) Filament: The body of bacterium is filamentous like a fungal mycelia. The filaments are very small e.g. Beggiota, Thiothrix etc.

(f) Stalked: The body of bacterium posses a stalk e.g. Caulobacter.

(g) Budded: The body of bacterium is swollen at places e.g. Retrodomicrobiom.

Role of Bacteria in nitrogen cycle:

Nitrogen cycle existing in nature, comprises of –

Nitrogen fixation:

(1) Many free-living soil inhabiting bacteria such as, Azotobacter (aerobic), Clostridium (anaerobic), etc. have ability to fix atmospheric nitrogen into ammonia.

(2) The other group of nitrogen fixing bacteria lives in symbiotic association with other plants.

(3) The most important symbiotic nitrogen fixing bacteria is Rhizobium spp.

(4) The various species of Rhizobium inhabit different leguminous plants. For example, R. leguminosarium infects soyabeans, etc.

(5) They develop root nodules and fix atmospheric nitrogen into ammonia in symbiotic association with leguminous plants.

(6) The fixed nitrogen is partly taken up by the leguminous plants and metabolised.

(7) A part of fixed nitrogen is diffused out into the surrounding soil.

Ammonification:

(1) The nitrogenous compounds of the dead remains of plants, animals and their excretory products are decomposed into ammonia by a number of bacteria and other microorganisms.

(2) The conversion of nitrogenous organic compounds into ammonia is termed as ammonification.

(3) It is carried by many ammonifying bacteria such as Bacillus ramosus, B. vulgaris, B. mycoides, etc.

Nitrification:

(1) Many bacteria enhance the nitrogen fertility of soil by converting ammonium compounds to nitrites (e.g., Nitrosomonas) and nitrites into nitrates (e.g., Nitrobacter).

(2) The Nitrosomonas group oxidizes ammonia into nitrite –

(3)The Nitrobacter group oxidizes nitrite to nitrates –

Denitrification:

The nitrates and ammonia are converted to nitrous oxide and finally to nitrogen gas by several denitrifying bacteria, e.g., Pseudomonas fluorescence, P. denitrificans, Bacillus subtilis, Thiobacillus denitirficans, etc.

Useful activities 

(i) Decay of organic wastes: Many saprotrophic bacteria act as natural scavengers by continuously removing the harmful organic wastes (i.e., dead remains of animals and plants) from man's environment. They decompose the organic matter by putrifaction and decay. The simple compounds produced as a result of decomposition and decay (viz., carbon dioxide, carbon monoxide, nitrates, sulphates, phosphates, ammonia, etc.) are either released back into the environment for recycling or absorbed by the plants as food. Thus, the bacteria play duel role by disposing of the dead bodies and wastes of organisms and by increasing the fertility of soil.

(ii) Role in improving soil fertility: Saprotrophic bacteria present in soil perform various activities for their survival. Some of these activities improve the fertility of soil by formation of humus, manure, etc.

(a) Humus: The microbial decomposition of organic matter and mineralization results in the formation of complex amorphous substance called humus. The humus improves the aeration, water holding capacity, solubility of soil minerals, oxidation-reduction potential and buffering capacity of the soil.

(b) CompostingIt is conversion of farm refuse, dung and other organic wastes into manure by the activity of saprotrophic bacteria (e.g., Bacillus stearothermophilus, Clostridium thermocellum, Thermomonospora spp, etc.)

(c) Adding sulphates: A few sulphur bacteria (e.g., Beggiatoa) add sulphur into the soil by converting H2S into sulphates.

(iii) Sewage, disposal: Ability of anaerobic bacteria to purify the organic matter is used in the the sewage disposal system of cities. The faeces are stored in covered reservoirs and allowed to purify. The solid matter is decomposed into liquidy sludge which is passed through coarse filters. The effluent is finally purified and drained out into the river or used as fertilizer in the fields. The common bacteria involved in sewage disposal are – Coliforms (E. coli), Streptococci, Clostridium, Micrococcus, Proteus, Pseudomonas, Lactobacillus, etc.

(iv) Role in Industry: Useful activities of various bacteria are employed in the production of a number of industrial products. Some of these are given below–

(a) Lactic acid: Lactic acid is commercially produced from pasteurized whey (the watery part of milk) through fermentation caused by Lactobacilus bulgaricus and L. delbrueckii.

(b) Curd: Curd is prepared from pasteurized milk by the process called curdling. It is initiated by adding a starter culture of Lactobacillus bulgaricus and Streptococcus thermophillus, into the milk at 40°CLactobacillus converts lactose to lactic acid whereas Streptococcus causes coagulation of casein due to acidity.

(c) Cheese: Preparation of cheese from the milk involves two main steps – first curdling of milk, and second the subsequent ripening of solid curd by the use of different bacterial strains.

(d) Butter: It is prepared by churning of sweet or sour cream. The microorganisms responsible for preparation of butter cream are – Streptococcus lactis and Leuconostoc citrivorumare. The characteristic butter aroma develops due to a volatile substance – diacetyl. It is produced by the action of streptococcus on pasteurized milk.

(e) Retting process: Fibres of flax, hemp and jute are separated by the process called retting. During this process the stems of the plants are submerged in water, where the bacterial activity results in the rotting of softer parts. The tough bast fibres become loosened and easily separated from each other. These fibres are spun and woven into various articles.

(f) Vinegar: Country made vinegar is a fermentation product of cane juice, molasses or fruit juices. It is produced in two steps – first conversion of sugars into alcohols by alcholic fermentation carried by yeast, and the second, conversion of alcohol to acetic acid by the action of bacteria Acetobacter (A. orieansis, A. acetic, A. schuizenbachi, etc.). Vinegar is used in the preparation of pickles or in place of acetic acid. It is used as preservative of meats and vegetables.

(v) Role of bacteria in human being: E.coli (gram-ve) bacteria live in colon region of intestine of man and other animals and play an important role in digestion process.

(vi) Medicinal uses

(a) Vitamins: Production of riboflavin (vitamin B2) involves the activity of bacterium – Clostridium butyticum. The well known vitamin C (ascorbic acid) is produced from sorbital by the action of Acetobactor spp.

(b) Serum and vaccines: Many bacteria are used in the preparation of serums and vaccines. These substances induce immunity to various diseases in man. Serums are effective against certain diseases like diphtheria, pneumonia, etc., whereas the vaccines are effective against typhoid, smallpox, cholera, etc.

(c) EnzymesSome bacteria live in the alimentary canal of herbivorous animals like cow, horse, goat, etc. and help in the production of certain enzymes which digest the cellulose. The enzymes proteases are produced by bacteria Bacillus subtilis. Similarly, the enzyme pectinase is produced by Clostridium sp, which is used in retting of flax.

(d) AntibioticsThese are the chemical substances produces by living microorganisms capable of inhibiting or destroying other microbes. These are the products of secondary and minor metabolic pathways, mostly secreted extracellularly by the microorganisms. These are used in controlling various infectious diseases.

At present more than 5000 antibiotic substances are known and approximately 100 are available for medicinal use. The most important bacterium which produces maximum number of antibiotics is Streptomyces.

List of some common antibiotics, their sources and their applications

S. No.

Antibiotic

Obtained from

Used against

A

Streptomycin

Streptomyces griseus

Gram-positive and Gram-negative bacteria, TB, tularemia (rabbit fever), influenza, meaningitis, baciltary dysentery, etc.

B

Actidine

S. griseus

Plant diseases caused by fungi.

C

Chloromycetin

S. venezuelae

Gram-positive and Gram- negative bacteria, typhoid, rickettsias

D

Tetracycline

S. aurefaciens

Gram-positive and Gram-negative bacteria, rickettsiae.

E

Terramycin

S. ramosus

Gram positive and Gram-negative bacteria.

F

Erythromycin

S. erythreus

Gram positive bacteria, whooping cough, diphtheria.

G

Neomycin

S. fradiae

Gram- positive, Gram negative and TB bacteria.

H

Amphomycin

S. carus

Gram-positive bacteria,

I

Amphotericin B

S. nodosus

Yeast, fungi

J

Leucomycin

S. kitasoensis

Gram-positive bacteria.

K

Trichomycin

S. hachijoensis

Yeast and fungi.

L

Viomycin

S. floridae

Gram-positive, Gram-negative and TB bacteria.

M

Bacitracin

Bacillus subtilis

Gram-positive bacteria

N

Gramicidin

B. brevis

Gram-positive bacteria.

O

Tyrothricin

B. brevis

Gram-positive and Gram-negative bacteria.

P

Polymyxin B

Aerobacillus polymyxa

Gram-negative bacteria.

Microbes in production of biogas

Methanogens:

These are strict anaerobic bacteria and mainly occur in muddy areas and also in stomach of cattle, where cellulose is fermented by microbes. These are responsible for methane gas (CH4 ) formation in bio-gas plants, because they have capacity to produce CH4 from CO2 or formic acid (HCOOH). 

Biotechnology

 

Revision Notes on Biotechnology

Recombinant DNA technology

Definition:

Genetic engineering, a kind of biotechnology, is the latest branch in applied genetics dealing the alteration of the genetic makeup of cells by deliberate and artificial means. Genetic engineering involves transfer or replacement of genes, so also known as recombination DNA technology or gene splicing.

Tools of genetic engineering:

(1) Two enzymes used in genetic engineering are restriction endonuclease and ligases.

(2) R.E. is used to cut the plasmid as well as the foreign DNA molecules of specific points while ligase is used to seal gaps or to join bits of DNA.

(3) The ability to clone and sequence essentially any gene or other DNA sequence of interest from any species depends on a special class of enzymes called restriction endonucleases.

(4) Restriction endonucleases are also called as molecular scissors or ‘chemical scalpels’.

(5) Restriction endonucleases cleave DNA molecules only at specific nucleotide sequence called restriction sites.

(6) The first restriction enzyme identified from a bacterial strain is designated I, the second II and so on, thus, restriction endonuclease EcoRI is produced by Escherichia coli strain RY 13.

(7) Restriction enzyme called EcoRI recognizes the sequence

                                              

(8) It then cleaves the DNA between G and A on both strands. Restriction nucleases make staggered cuts; that is, they cleave the two strands of a double helix at different joints and blunt ended fragments; that is, they cut both strands at same place.

Steps of recombinant DNA technology

(1) Isolating a useful DNA segment from the donor organism.

(2) Splicing it into a suitable vector under conditions to ensure that each vector receives no more than one DNA fragment.

(3) Producing of multiple copies of his recombinant DNA.

(4) Inserting this altered DNA into a recipient organism.

(5) Screening of the transformed cells.

Vectors:

Vector in genetic engineering is usually a DNA segment used as a carrier for transferring selected DNA into living cells. These are as follows:

(1) Plasmid: Plasmid is extra chromosomal, closed circular double stranded molecules of DNA present in most eukaryotes. All plasmid carry replicons pieces of DNA that have the genetic information required to replicate. Plasmid pBR 322 was one of the first widely used cloning vectors, it contain both ampicillin and tetracycline resistance genes.

(2) Phage: It is constructed from the phage l chromosomes and acts as bacteriophage cloning vectors.

(3) Cosmid: The hybrids between plasmid and the phage l chromosome give rise to cosmid vectors.

(4) Beside all these there are artificial chromosomes like

(i) BACs (Bacterial Artificial chromosomes)

(ii) YACs (Yeast Artificial chromosomes)

(iii) MACs (Mammalian Artificial chromosomes) are very efficient vectors for eukaryotic gene transfers.

Application of recombinant DNA technology:

The technique of recombinant DNA can be employed in the following ways.

(1) It can be used to elucidate molecular events in the biological process such as cellular differentiation and ageing. The same can be used for making gene maps with precision.

(2) In biochemical and pharmaceutical industry, by engineering genes, useful chemical compounds can be produced cheaply and efficiently which is shown in table.

Applications of recombinant DNA products

Medically useful recombinant products

Applications

Human insulin

Treatment of insulin-dependent diabetes

Human growth hormone

Replacement of missing hormone in short stature people

Calcitonin

Treatment of rickets

Chronic gonadotropin

Treatment of infertility

Blood clotting factor VIII/IX

Replacement of clotting factor missing in patients with Haemophilia A/B

Tissue plasminogen activator

Dissolving blood clots after heart attacks and strokes

Erythropoitin

Stimulation of the formation of erythrocytes (RBCs) for patients suffering from anaemia during kidney dialysis or side effects of AIDS patients treated by drugs

Platelet derived growth factor

Stimulation of wound healing

Interferon

Treatment of pathogenic viral infections, cancer

Interleukins

Enhancement of action of immune system

Vaccines

Prevention of infectious diseases such as hepatitis B, herpes, influenza, pertussis, meningitis, etc.

Cloning:

Cloning is the process of producing many identical organisms or clones. In this process nucleus of ovum (n) is removed and replaced by nucleus of diploid cell of same organism. Now the egg with 2n nucleus is transferred to the uterus of mother to have normal pregnancy and delivers clone of itself.

Examples of organism cloning

(1) Cloning of sheep was done by Dr. Ian Wilmut (1995) of Roslin Institute, Edinberg U.K. and normal healthy lamb (DOLLY) was born in Feb, 1996. This lamb was exactly similar to her mother.

(2) The first cloned calves George and Charlie were born in January 1998.

(3) ANDI was the world’s first genetically altered primate produced by inserting a jelly fish gene into the embryo of a rhesus monkey.

(4) Scientist at Scotland cloned POLLY and MOLLY. Unlike Dolly, polly and molly were transgenic (they carried human protein gene) polly and molly were born in july 1997.

(5) Brigitte Boissliar, a 46-year old french chemist announced the creation of the world’s first cloned human boby nicknamed “Eve” (December 2002).

Polymerase chain reaction (PCR):

(1) It was developed by Kary Mullis in 1983 and won Nobel Prize in 1993.

(2) PCR is a method for amplifying a specific piece of DNA molecule without the requirement for time-consuming cloning procedure.

(3) This process require Target DNA, a heat stable DNA polymerase, which work at optimum temperature of 70°C usually Taq DNA and four types of nucleotides with small single stranded strands of DNA of about 20 nucleotide called primers, produce multiple copy of desired DNA.

Breathing and Exchange of Gases

  Breathing and Exchange of Gases Table of Content What is Breathing and Respiration? Respiratory organs Human Respiratory System Mechanism ...